Trajectory-based differential expression analysis for single-cell sequencing data | Nature Communications
15 Pseudotime Cell Trajectories | ANALYSIS OF SINGLE CELL RNA-SEQ DATA
A guide to trajectory inference and RNA velocity | bioRxiv
PseudotimeDE: inference of differential gene expression along cell pseudotime with well-calibrated p-values from single-cell RNA sequencing data | Genome Biology | Full Text
Single-cell trajectory analysis
Global Dynamic Molecular Profiles of Stomatal Lineage Cell Development by Single-Cell RNA Sequencing | bioRxiv
PseudotimeDE: inference of differential gene expression along cell pseudotime with well-calibrated p-values from single-cell RNA sequencing data | bioRxiv
The single cell pseudotime estimation problem. (A) Single cells at... | Download Scientific Diagram
Pseudotime analysis in 5-plex time-course experiment. (A) Monocle... | Download Scientific Diagram
Cellular Differentiation Using Trajectory Analysis & Single Cell RNA-Seq Data – Partek Inc
pseudotime | RNA-Seq Blog
Generalized and scalable trajectory inference in single-cell omics data with VIA | Nature Communications
Pseudotime Estimation – Deconfounding Single Cell Time Series | RNA-Seq Blog
Frontiers | CALISTA: Clustering and LINEAGE Inference in Single-Cell Transcriptional Analysis
Chapter 10 Trajectory Analysis | Advanced Single-Cell Analysis with Bioconductor
PseudotimeDE, statistical method that outperforms existing methods in its detection power | UCLA Computational Medicine
Frontiers | LISA2: Learning Complex Single-Cell Trajectory and Expression Trends
Chapter 10 Trajectory Analysis | Advanced Single-Cell Analysis with Bioconductor
Monocle
Pathologic evolution-related Gene Analysis based on both single-cell and bulk transcriptomics in Colorectal Cancer
Single-cell transcriptome analysis reveals TOX as a promoting factor for T cell exhaustion and a predictor for anti-PD-1 responses in human cancer | Genome Medicine | Full Text
