Stacks: Stacks Manual
bcftools view | bcftools tutorial on how to count the number of snps and indels in a vcf file - YouTube
GitHub - chapmanb/vcftools-cpan: cpanm ready distribution of VCFtools Perl libraries
Repurposing population genetics data to discern genomic architecture: A case study of linkage cohort detection in mountain pine beetle (Dendroctonus ponderosae) - Trevoy - 2019 - Ecology and Evolution - Wiley Online Library
SNiPlay : Manual Pipeline V3
Filtering of VCF Files
Fulltext – Journal of Animal Breeding and Genomics
VIVA (VIsualization of VAriants): A VCF File Visualization Tool | Scientific Reports
vcftools installation in Centos 7.4 - YouTube
Stacks: Stacks Manual
VIVA (VIsualization of VAriants): A VCF File Visualization Tool | Scientific Reports
NGS variants output and visualization: VCF and IGV Variant Calling Format (VCF) Variant Calling Format (VCF) Variant Calling For
Frontiers | A Novel SARS-CoV-2 Viral Sequence Bioinformatic Pipeline Has Found Genetic Evidence That the Viral 3′ Untranslated Region (UTR) Is Evolving and Generating Increased Viral Diversity
Stacks: Stacks Manual
Information processing after resequencing - ppt download
Data analysis pipeline used in this study. Using a combination of... | Download Scientific Diagram
Variant Call Format - Wikipedia
Workshop 3: Calling and filtering SNPs and indels.
VINYL
SNP Filtering Tutorial
VCF merge or concatenate?
Genes | Free Full-Text | Whole Genome Sequencing Reveals Multiple Linked Genetic Variants on Canine Chromosome 12 Associated with Risk for Symmetrical Lupoid Onychodystrophy (SLO) in the Bearded Collie
SNPs - Genetic Diversity Centre (GDC) - Course Webpage
Bcftools tutorial on How to read VCF files | indexing VCFs - YouTube
Fulltext – Journal of Animal Breeding and Genomics
EvalAdmix - software
Variant calling with Freebayes | In-depth-NGS-Data-Analysis-Course
